There are a few things you can do to keep your Skyrim mods clean and organized.

  1. Make a list of all the mods you have installed. This will help you keep track of where they are and what they do.
  2. Remove any mods that you no longer need or want. This will free up space on your hard drive and make your mod installation easier.
  3. Rename any files that are not needed by the new mod you are installing. This will help you remember which files belong to which mods and make uninstallation easier.
  4. Delete any old savegames that have been created with mods installed before the new one was released. This will clear out any old data that may be causing problems when trying to install the new mod later on.